Variant report

Variant	rs8003598
Chromosome Location	chr14:79193690-79193691
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10137516	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10148040	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17757467	0.92[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2241441	0.84[CEU][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28505980	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28728169	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35035363	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35813445	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7148462	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs985956	0.92[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs988014	0.84[CEU][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs8003598	COQ6	cis	cerebellum	SCAN
rs8003598	TMEM90A	cis	cerebellum	SCAN
rs8003598	GTF2A1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79189400-79198200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:79190000-79200200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:79192000-79194000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:79192000-79198200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:79192200-79198400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:79192400-79197400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:79192400-79198200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr14:79192400-79198200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:79192400-79198200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:79193000-79193800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:79193400-79198200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:79193600-79193800	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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