Variant report

Variant	rs12147462
Chromosome Location	chr14:69201958-69201959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69201544..69205045-chr14:69260784..69263529,4	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1535344	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106221	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106229	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194772	0.91[ASN][1000 genomes]
rs7144216	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157514	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:69195600-69202800	Weak transcription	Fetal Kidney	kidney
3	chr14:69196400-69203600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:69196600-69203200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:69197800-69202200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:69198200-69203000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:69198200-69203000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:69198400-69202400	Weak transcription	Ovary	ovary
9	chr14:69198400-69203400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:69198400-69214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:69198600-69202400	Weak transcription	HSMMtube	muscle
12	chr14:69198600-69203000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:69198800-69202200	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:69198800-69202800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:69198800-69203200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:69199000-69202800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr14:69199000-69203000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:69199000-69203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:69199200-69202800	Weak transcription	HepG2	liver
20	chr14:69199200-69204400	Enhancers	Brain Germinal Matrix	brain
21	chr14:69199400-69202000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:69199400-69203800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:69199600-69202000	Enhancers	Primary T cells from cord blood	blood
24	chr14:69199600-69206800	Enhancers	Fetal Muscle Leg	muscle
25	chr14:69199800-69202000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr14:69199800-69202200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:69199800-69202600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr14:69199800-69202600	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr14:69199800-69202800	Enhancers	Primary T cells fromperipheralblood	blood
30	chr14:69199800-69203400	Enhancers	Primary B cells from peripheral blood	blood
31	chr14:69199800-69203800	Enhancers	Fetal Thymus	thymus
32	chr14:69199800-69204000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr14:69200000-69202000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr14:69200000-69202000	Enhancers	Spleen	Spleen
35	chr14:69200000-69202600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:69200000-69202800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:69200000-69202800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr14:69200000-69203200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr14:69200000-69203200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr14:69200000-69204200	Enhancers	Adipose Nuclei	Adipose
41	chr14:69200000-69205400	Enhancers	Fetal Muscle Trunk	muscle
42	chr14:69200200-69202000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr14:69200200-69202000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:69200200-69203200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:69200200-69203400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr14:69200200-69207000	Enhancers	Fetal Stomach	stomach
47	chr14:69200400-69202800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr14:69200400-69203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:69200600-69202000	Enhancers	HUVEC	blood vessel
50	chr14:69200600-69202800	Enhancers	Colon Smooth Muscle	Colon

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