Variant report

Variant	rs7157514
Chromosome Location	chr14:69201318-69201319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69199814..69201637-chr14:69202676..69204761,2	K562	blood:

Variant related genes	Relation type
ENSG00000207089	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12147462	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535344	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106221	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106229	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194772	0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7144216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:69195200-69201600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:69195600-69202800	Weak transcription	Fetal Kidney	kidney
4	chr14:69196400-69201600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:69196400-69203600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:69196600-69203200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:69197800-69202200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:69198200-69203000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:69198200-69203000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr14:69198400-69202400	Weak transcription	Ovary	ovary
11	chr14:69198400-69203400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:69198400-69214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:69198600-69202400	Weak transcription	HSMMtube	muscle
14	chr14:69198600-69203000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:69198800-69202200	Enhancers	Primary hematopoietic stem cells	blood
16	chr14:69198800-69202800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr14:69198800-69203200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr14:69199000-69201800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr14:69199000-69202800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr14:69199000-69203000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:69199000-69203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:69199200-69202800	Weak transcription	HepG2	liver
23	chr14:69199200-69204400	Enhancers	Brain Germinal Matrix	brain
24	chr14:69199400-69202000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:69199400-69203800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:69199600-69202000	Enhancers	Primary T cells from cord blood	blood
27	chr14:69199600-69206800	Enhancers	Fetal Muscle Leg	muscle
28	chr14:69199800-69201400	Enhancers	Fetal Intestine Large	intestine
29	chr14:69199800-69202000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:69199800-69202200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:69199800-69202600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr14:69199800-69202600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr14:69199800-69202800	Enhancers	Primary T cells fromperipheralblood	blood
34	chr14:69199800-69203400	Enhancers	Primary B cells from peripheral blood	blood
35	chr14:69199800-69203800	Enhancers	Fetal Thymus	thymus
36	chr14:69199800-69204000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr14:69200000-69201400	Enhancers	Brain Substantia Nigra	brain
38	chr14:69200000-69201600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:69200000-69202000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr14:69200000-69202000	Enhancers	Spleen	Spleen
41	chr14:69200000-69202600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:69200000-69202800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:69200000-69202800	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr14:69200000-69203200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:69200000-69203200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr14:69200000-69204200	Enhancers	Adipose Nuclei	Adipose
47	chr14:69200000-69205400	Enhancers	Fetal Muscle Trunk	muscle
48	chr14:69200200-69201600	Enhancers	GM12878-XiMat	blood
49	chr14:69200200-69201800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:69200200-69202000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links