Variant report

Variant	rs12149208
Chromosome Location	chr16:52272442-52272443
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10521259	0.88[ASN][1000 genomes]
rs10521260	0.88[ASN][1000 genomes]
rs1191205	0.82[EUR][1000 genomes]
rs12149054	0.85[ASN][1000 genomes]
rs12446673	0.88[ASN][1000 genomes]
rs12919975	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12920812	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12921894	0.85[ASN][1000 genomes]
rs1362384	0.85[ASN][1000 genomes]
rs1362385	0.85[ASN][1000 genomes]
rs1362386	0.88[ASN][1000 genomes]
rs1362387	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1420203	0.88[ASN][1000 genomes]
rs1420204	0.88[ASN][1000 genomes]
rs1420205	0.88[ASN][1000 genomes]
rs17354393	0.88[ASN][1000 genomes]
rs2160274	0.85[ASN][1000 genomes]
rs2192847	0.85[ASN][1000 genomes]
rs2192848	0.85[ASN][1000 genomes]
rs2216052	0.85[ASN][1000 genomes]
rs2540701	0.81[EUR][1000 genomes]
rs2540746	0.85[ASN][1000 genomes]
rs2540748	0.85[ASN][1000 genomes]
rs34483935	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34646478	0.82[ASN][1000 genomes]
rs35639867	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35650351	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs5007517	0.84[ASN][1000 genomes]
rs5010123	0.81[ASN][1000 genomes]
rs7184216	0.88[ASN][1000 genomes]
rs7188574	0.88[ASN][1000 genomes]
rs7189025	0.88[ASN][1000 genomes]
rs7189391	0.82[ASN][1000 genomes]
rs7194603	0.88[ASN][1000 genomes]
rs7201536	0.88[ASN][1000 genomes]
rs7201636	0.88[ASN][1000 genomes]
rs7202128	0.88[ASN][1000 genomes]
rs7202303	0.82[ASN][1000 genomes]
rs7205520	0.88[ASN][1000 genomes]
rs7206102	0.88[ASN][1000 genomes]
rs7206335	0.88[ASN][1000 genomes]
rs7206623	0.88[ASN][1000 genomes]
rs8058391	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52267200-52272800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr16:52272400-52273600	Enhancers	Cortex derived primary cultured neurospheres	brain

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