Variant report

Variant	rs1191205
Chromosome Location	chr16:52219942-52219943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10521259	0.89[ASN][1000 genomes]
rs10521260	0.89[ASN][1000 genomes]
rs1211507	0.83[ASN][1000 genomes]
rs1211854	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12149054	0.93[ASN][1000 genomes]
rs12149208	0.82[EUR][1000 genomes]
rs12446673	0.89[ASN][1000 genomes]
rs12919975	0.89[ASN][1000 genomes]
rs12920812	0.85[ASN][1000 genomes]
rs12921894	0.93[ASN][1000 genomes]
rs1362384	0.93[ASN][1000 genomes]
rs1362385	0.93[ASN][1000 genomes]
rs1362386	0.89[ASN][1000 genomes]
rs1362387	0.89[ASN][1000 genomes]
rs1420203	0.89[ASN][1000 genomes]
rs1420204	0.89[ASN][1000 genomes]
rs1420205	0.89[ASN][1000 genomes]
rs1641365	0.88[AFR][1000 genomes]
rs17269910	0.86[CEU][hapmap]
rs17353227	0.83[ASN][1000 genomes]
rs17354393	0.89[ASN][1000 genomes]
rs2160274	0.93[ASN][1000 genomes]
rs2192847	0.93[ASN][1000 genomes]
rs2192848	0.93[ASN][1000 genomes]
rs2216052	0.93[ASN][1000 genomes]
rs2540690	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2540691	0.83[ASN][1000 genomes]
rs2540692	0.83[ASN][1000 genomes]
rs2540746	0.93[ASN][1000 genomes]
rs2540748	0.93[ASN][1000 genomes]
rs3095561	0.81[ASN][1000 genomes]
rs34483935	0.89[ASN][1000 genomes]
rs34646478	0.83[ASN][1000 genomes]
rs35639867	0.89[ASN][1000 genomes]
rs35650351	0.85[ASN][1000 genomes]
rs5007517	0.85[ASN][1000 genomes]
rs5010123	0.89[ASN][1000 genomes]
rs7184216	0.89[ASN][1000 genomes]
rs7188574	0.89[ASN][1000 genomes]
rs7189025	0.89[ASN][1000 genomes]
rs7189391	0.83[ASN][1000 genomes]
rs7194603	0.89[ASN][1000 genomes]
rs7201536	0.89[ASN][1000 genomes]
rs7201636	0.89[ASN][1000 genomes]
rs7202128	0.89[ASN][1000 genomes]
rs7202303	0.83[ASN][1000 genomes]
rs7205520	0.89[ASN][1000 genomes]
rs7206102	0.89[ASN][1000 genomes]
rs7206335	0.89[ASN][1000 genomes]
rs7206623	0.89[ASN][1000 genomes]
rs8058391	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1808	chr16:52214779-52247196	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv522374	chr16:52219942-52228745	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52219600-52220400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr16:52219800-52220200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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