Variant report

Variant	rs12153296
Chromosome Location	chr5:108586279-108586280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11955331	1.00[EUR][1000 genomes]
rs11958606	0.91[EUR][1000 genomes]
rs12186680	0.91[EUR][1000 genomes]
rs12186683	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17161661	0.83[EUR][1000 genomes]
rs2416204	0.83[EUR][1000 genomes]
rs6863208	0.83[EUR][1000 genomes]
rs6898089	0.83[EUR][1000 genomes]
rs73779329	0.91[EUR][1000 genomes]
rs73779394	0.91[EUR][1000 genomes]
rs73779395	0.91[EUR][1000 genomes]
rs73781207	1.00[EUR][1000 genomes]
rs7442893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4955	chr5:108577946-108611852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12153296	SERPINB10	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108585000-108586400	Weak transcription	Placenta	Placenta
2	chr5:108585200-108589600	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:108586000-108606000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:108586200-108586600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links