Variant report

Variant	rs7442893
Chromosome Location	chr5:108573075-108573076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11955331	1.00[EUR][1000 genomes]
rs11958606	0.91[EUR][1000 genomes]
rs12153296	1.00[EUR][1000 genomes]
rs12186680	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17161661	0.83[EUR][1000 genomes]
rs2416204	0.83[EUR][1000 genomes]
rs6863208	0.83[EUR][1000 genomes]
rs6898089	0.83[EUR][1000 genomes]
rs73779329	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73779394	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73779395	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73781207	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108572200-108573200	ZNF genes & repeats	Aorta	Aorta
2	chr5:108572200-108573200	ZNF genes & repeats	Liver	Liver
3	chr5:108572200-108574200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:108572800-108573200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:108573000-108573200	ZNF genes & repeats	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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