Variant report

Variant	rs12153447
Chromosome Location	chr5:108079523-108079524
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11240983	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11741158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12152902	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12153449	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12153549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12188386	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13154354	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13169624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13184924	1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs13185815	1.00[YRI][hapmap]
rs34263420	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34505415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34989254	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108066600-108082600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:108076400-108079600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:108076600-108080000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:108078000-108080400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:108078400-108079800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:108078600-108079600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:108078800-108080200	Enhancers	HSMMtube	muscle
8	chr5:108078800-108080400	Enhancers	HSMM	muscle
9	chr5:108079000-108079800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr5:108079000-108080000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:108079000-108080000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:108079200-108080000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:108079200-108080000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:108079200-108080000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:108079200-108080000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:108079400-108079800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:108079400-108080000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:108079400-108082600	Weak transcription	Fetal Kidney	kidney
19	chr5:108079400-108083000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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