Variant report

Variant	rs13184924
Chromosome Location	chr5:108102347-108102348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108082154..108086653-chr5:108099254..108105297,6	K562	blood:
2	chr5:108083498..108086602-chr5:108101518..108103810,3	K562	blood:

Variant related genes	Relation type
ENSG00000151422	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11240983	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11741158	1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs12152902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12153447	1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs12153449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12153549	0.86[EUR][1000 genomes]
rs12188386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13154354	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13169624	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13174528	1.00[YRI][hapmap]
rs13181901	1.00[YRI][hapmap]
rs34263420	0.85[EUR][1000 genomes]
rs34505415	0.86[EUR][1000 genomes]
rs34989254	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs36047276	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13184924	APC	cis	parietal	SCAN

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108085600-108102600	Weak transcription	Lung	lung
2	chr5:108085600-108119800	Weak transcription	Left Ventricle	heart
3	chr5:108086200-108119200	Weak transcription	Fetal Kidney	kidney
4	chr5:108086200-108120600	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:108089800-108119400	Weak transcription	Hela-S3	cervix
6	chr5:108089800-108119800	Weak transcription	HSMM	muscle
7	chr5:108090000-108105000	Weak transcription	NHLF	lung
8	chr5:108090000-108109800	Weak transcription	Adipose Nuclei	Adipose
9	chr5:108090200-108127600	Weak transcription	NH-A	brain
10	chr5:108095000-108122600	Weak transcription	Right Ventricle	heart
11	chr5:108095600-108119400	Weak transcription	Aorta	Aorta
12	chr5:108095800-108102600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:108096000-108119600	Weak transcription	Primary B cells from cord blood	blood
14	chr5:108096200-108109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:108096200-108119800	Weak transcription	HSMMtube	muscle
16	chr5:108096400-108102400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:108096400-108102400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:108096400-108105600	Weak transcription	HMEC	breast
19	chr5:108096400-108107200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:108096400-108107600	Weak transcription	Fetal Lung	lung
21	chr5:108096400-108108400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:108096400-108109200	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:108096400-108109400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:108096400-108110400	Weak transcription	Fetal Brain Female	brain
25	chr5:108096400-108112800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:108096400-108134000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:108096600-108109600	Weak transcription	Fetal Intestine Small	intestine
28	chr5:108096600-108119400	Weak transcription	Primary T cells from cord blood	blood
29	chr5:108096800-108109000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr5:108098200-108102600	Weak transcription	Gastric	stomach
31	chr5:108098400-108105000	Weak transcription	Brain Anterior Caudate	brain
32	chr5:108098400-108106200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:108098400-108111600	Weak transcription	Brain Angular Gyrus	brain
34	chr5:108098400-108128000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr5:108098600-108106800	Weak transcription	Fetal Thymus	thymus
36	chr5:108098600-108107000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:108098600-108107800	Weak transcription	Brain Substantia Nigra	brain
38	chr5:108098800-108102400	Weak transcription	K562	blood
39	chr5:108099200-108107000	Weak transcription	Fetal Brain Male	brain
40	chr5:108099200-108107600	Weak transcription	Ovary	ovary
41	chr5:108099200-108114600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr5:108099200-108119400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:108099200-108119400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr5:108099200-108119800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:108099400-108108200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr5:108099400-108119200	Weak transcription	A549	lung
47	chr5:108099400-108122400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr5:108099600-108102400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr5:108099600-108105200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:108099600-108117200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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