Variant report

Variant	rs13181901
Chromosome Location	chr5:108170607-108170608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10515395	0.85[AMR][1000 genomes]
rs11949314	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11949596	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11955045	0.89[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12152902	1.00[YRI][hapmap]
rs12188386	1.00[YRI][hapmap]
rs13169624	1.00[YRI][hapmap]
rs13169856	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13171190	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13174393	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13174528	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13177718	0.86[CEU][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13183239	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13183520	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13184924	1.00[YRI][hapmap]
rs13185815	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34188045	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34349846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34494089	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34609891	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34793372	0.94[AMR][1000 genomes]
rs35137434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35238524	0.94[AMR][1000 genomes]
rs35290386	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35316595	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35603379	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35746105	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35767331	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35778913	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35893408	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35940503	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36047276	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36054201	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55665982	0.85[AMR][1000 genomes]
rs55960958	0.85[AMR][1000 genomes]
rs71586586	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71592766	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71592767	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71592769	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71592772	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71592774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1801555	chr5:108166720-108203055	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108146800-108183600	Weak transcription	Ovary	ovary
2	chr5:108147000-108198800	Weak transcription	Aorta	Aorta
3	chr5:108147000-108208800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:108150400-108171400	Weak transcription	NHDF-Ad	bronchial
5	chr5:108153400-108176400	Weak transcription	NHLF	lung
6	chr5:108154800-108176400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:108156000-108174400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:108156400-108178200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:108160200-108172400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:108164800-108182400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:108165800-108181000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:108165800-108194200	Weak transcription	NHEK	skin
13	chr5:108166000-108176000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:108166000-108176200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:108166400-108193600	Weak transcription	Primary B cells from cord blood	blood
16	chr5:108166400-108203200	Weak transcription	HSMM	muscle
17	chr5:108166600-108194600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:108166600-108217000	Weak transcription	Left Ventricle	heart
19	chr5:108166800-108176600	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:108166800-108178400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:108167000-108172600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:108167200-108178000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:108167200-108220400	Weak transcription	Fetal Lung	lung
24	chr5:108167400-108173800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr5:108167600-108186400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:108167600-108187000	Weak transcription	Fetal Intestine Small	intestine
27	chr5:108167800-108186200	Weak transcription	Fetal Muscle Leg	muscle
28	chr5:108168000-108171200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:108168000-108182200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr5:108168200-108172000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:108168200-108172400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:108168200-108185200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:108168200-108186800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:108168200-108194400	Weak transcription	Fetal Heart	heart
35	chr5:108168200-108195000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr5:108168200-108203800	Weak transcription	Adipose Nuclei	Adipose
37	chr5:108168400-108181800	Weak transcription	Osteobl	bone
38	chr5:108168800-108180200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:108169400-108229200	Weak transcription	Fetal Stomach	stomach
40	chr5:108169800-108184800	Weak transcription	Fetal Brain Male	brain
41	chr5:108170200-108181600	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links