Variant report

Variant	rs12155609
Chromosome Location	chr8:39748559-39748560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10089078	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10089084	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10090859	0.96[ASN][1000 genomes]
rs10108662	0.87[ASN][1000 genomes]
rs10282745	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282753	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781681	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248037	1.00[ASN][1000 genomes]
rs13275363	0.99[ASN][1000 genomes]
rs13278716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2340949	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701100	0.97[ASN][1000 genomes]
rs28792440	0.95[ASN][1000 genomes]
rs28797203	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35290228	1.00[ASN][1000 genomes]
rs35323275	0.98[ASN][1000 genomes]
rs5019014	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6474188	1.00[ASN][1000 genomes]
rs6474193	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66531372	0.98[ASN][1000 genomes]
rs67257318	0.98[ASN][1000 genomes]
rs67692362	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68145761	0.98[ASN][1000 genomes]
rs6989949	1.00[ASN][1000 genomes]
rs6989954	1.00[ASN][1000 genomes]
rs6997491	1.00[ASN][1000 genomes]
rs7005763	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7009740	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7812568	1.00[ASN][1000 genomes]
rs7816174	1.00[ASN][1000 genomes]
rs7820268	0.89[ASN][1000 genomes]
rs7824315	1.00[ASN][1000 genomes]
rs7825999	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828521	1.00[ASN][1000 genomes]
rs7831046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7832494	1.00[ASN][1000 genomes]
rs7838545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9693751	1.00[ASN][1000 genomes]
rs9693823	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv508505	chr8:39730094-39791331	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39747400-39757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:39748000-39750800	Weak transcription	A549	lung

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