Variant report

Variant	rs6474193
Chromosome Location	chr8:39773599-39773600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:39773503-39773637	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
IDO1	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10089078	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10089084	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10090859	0.84[ASN][1000 genomes]
rs10108662	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10282745	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10282753	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11781681	0.88[ASN][1000 genomes]
rs12155609	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13248037	0.88[ASN][1000 genomes]
rs13275363	0.87[ASN][1000 genomes]
rs13278716	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2340949	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28701100	0.89[ASN][1000 genomes]
rs28792440	0.83[ASN][1000 genomes]
rs28797203	0.86[ASN][1000 genomes]
rs35290228	0.88[ASN][1000 genomes]
rs35323275	0.90[ASN][1000 genomes]
rs5019014	0.85[ASN][1000 genomes]
rs6474188	0.88[ASN][1000 genomes]
rs66531372	0.90[ASN][1000 genomes]
rs67257318	0.90[ASN][1000 genomes]
rs67692362	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68145761	0.90[ASN][1000 genomes]
rs6989949	0.88[ASN][1000 genomes]
rs6989954	0.88[ASN][1000 genomes]
rs6997491	0.88[ASN][1000 genomes]
rs7005763	0.84[ASN][1000 genomes]
rs7010461	0.80[EUR][1000 genomes]
rs7812568	0.88[ASN][1000 genomes]
rs7816174	0.88[ASN][1000 genomes]
rs7820268	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7824315	0.88[ASN][1000 genomes]
rs7825999	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7828521	0.88[ASN][1000 genomes]
rs7831046	0.86[ASN][1000 genomes]
rs7832494	0.88[ASN][1000 genomes]
rs7838545	0.87[ASN][1000 genomes]
rs9693751	0.88[ASN][1000 genomes]
rs9693823	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv508505	chr8:39730094-39791331	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39763200-39781600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:39763200-39783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39763400-39781000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:39763800-39780000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:39763800-39781800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
7	chr8:39771800-39775200	Weak transcription	Fetal Lung	lung
8	chr8:39771800-39781000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:39771800-39781000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:39772000-39781000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:39773400-39780000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:39773400-39782000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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