Variant report

Variant	rs7010461
Chromosome Location	chr8:39781444-39781445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr8:39781281-39781481	K562	blood:	n/a	n/a
2	FOS	chr8:39781347-39781541	MCF10A-Er-Src	breast:	n/a	n/a
3	TCF12	chr8:39781302-39782492	A549	lung:	n/a	chr8:39781984-39781993 chr8:39782448-39782456

Variant related genes	Relation type
ENSG00000254287	TF binding region
IDO1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10108662	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs6474193	0.80[EUR][1000 genomes]
rs7820268	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs9693012	0.85[ASN][1000 genomes]
rs9693835	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv508505	chr8:39730094-39791331	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39763200-39781600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:39763200-39783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:39763800-39781800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:39771600-39797200	Weak transcription	Right Atrium	heart
5	chr8:39773400-39782000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:39780400-39782000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:39780800-39781800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr8:39780800-39782200	Enhancers	Ovary	ovary
9	chr8:39781000-39782000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:39781000-39782000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:39781000-39782200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:39781000-39782800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:39781000-39782800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:39781000-39782800	Enhancers	Fetal Lung	lung
15	chr8:39781000-39783000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:39781000-39783000	Enhancers	Adipose Nuclei	Adipose
17	chr8:39781000-39783200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr8:39781000-39786000	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr8:39781200-39781600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:39781200-39782200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:39781200-39783000	Enhancers	A549	lung
22	chr8:39781400-39781600	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:39781400-39782400	Enhancers	HUVEC	blood vessel

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