Variant report
Variant | rs9693835 |
---|---|
Chromosome Location | chr8:39755231-39755232 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:39749700..39751721-chr8:39753992..39756986,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10090859 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs13248037 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs13275363 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs28701100 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs28792440 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs35290228 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs35323275 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6474188 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs66531372 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs67257318 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs68145761 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6989949 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6989954 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6997491 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs7010461 | 0.85[ASN][1000 genomes] |
rs7812568 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7816174 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7824315 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7828521 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7832494 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs9693012 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9693751 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs9693823 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv539555 | chr8:39683857-40673606 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
2 | nsv508505 | chr8:39730094-39791331 | Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv1033371 | chr8:39749437-39899540 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:39747400-39757400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr8:39754400-39759800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |