Variant report
| Variant | rs12155730 |
|---|---|
| Chromosome Location | chr8:87959960-87959961 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:87955029..87956920-chr8:87957409..87960149,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10955124 | 0.90[ASN][1000 genomes] |
| rs10955125 | 0.90[ASN][1000 genomes] |
| rs11783526 | 0.91[ASN][1000 genomes] |
| rs13257723 | 0.81[ASN][1000 genomes] |
| rs13258790 | 0.81[ASN][1000 genomes] |
| rs13259744 | 0.91[ASN][1000 genomes] |
| rs1404456 | 0.88[ASN][1000 genomes] |
| rs2336865 | 0.93[ASN][1000 genomes] |
| rs28726085 | 0.91[ASN][1000 genomes] |
| rs35782202 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4422790 | 0.81[ASN][1000 genomes] |
| rs4538907 | 0.90[ASN][1000 genomes] |
| rs56007240 | 0.90[ASN][1000 genomes] |
| rs62529576 | 0.89[ASN][1000 genomes] |
| rs6468564 | 0.91[ASN][1000 genomes] |
| rs6468565 | 0.93[ASN][1000 genomes] |
| rs6468566 | 0.92[ASN][1000 genomes] |
| rs6468572 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6996849 | 0.84[ASN][1000 genomes] |
| rs7817373 | 0.81[ASN][1000 genomes] |
| rs7821356 | 0.90[ASN][1000 genomes] |
| rs7822655 | 0.91[ASN][1000 genomes] |
| rs7832955 | 0.81[ASN][1000 genomes] |
| rs7833876 | 0.89[ASN][1000 genomes] |
| rs7835558 | 1.00[ASN][1000 genomes] |
| rs7841043 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817372 | chr8:87746712-88292389 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015760 | chr8:87750555-88304604 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv831383 | chr8:87827274-88004897 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1020699 | chr8:87880120-88734779 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv539663 | chr8:87880120-88734779 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:87958200-87961000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
