Variant report

Variant	rs1404456
Chromosome Location	chr8:87964673-87964674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10955124	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955125	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11778111	0.85[ASN][1000 genomes]
rs11783526	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12155730	0.88[ASN][1000 genomes]
rs13257723	0.86[ASN][1000 genomes]
rs13258790	0.86[ASN][1000 genomes]
rs13259744	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2336865	0.94[ASN][1000 genomes]
rs28726085	0.82[ASN][1000 genomes]
rs35619624	0.88[ASN][1000 genomes]
rs35782202	0.92[ASN][1000 genomes]
rs4131423	0.88[ASN][1000 genomes]
rs4422790	0.86[ASN][1000 genomes]
rs4451326	0.82[ASN][1000 genomes]
rs4538907	0.81[ASN][1000 genomes]
rs4960931	0.88[ASN][1000 genomes]
rs4961000	0.85[ASN][1000 genomes]
rs4961003	0.86[AMR][1000 genomes]
rs56007240	0.81[ASN][1000 genomes]
rs62529576	0.80[ASN][1000 genomes]
rs6468564	0.86[ASN][1000 genomes]
rs6468565	0.84[ASN][1000 genomes]
rs6468566	0.83[ASN][1000 genomes]
rs6468572	0.93[ASN][1000 genomes]
rs6991217	0.86[ASN][1000 genomes]
rs6996849	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7817373	0.86[ASN][1000 genomes]
rs7821356	0.81[ASN][1000 genomes]
rs7822655	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7832955	0.86[ASN][1000 genomes]
rs7833876	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7835558	0.88[ASN][1000 genomes]
rs7841043	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831383	chr8:87827274-88004897	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020699	chr8:87880120-88734779	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv539663	chr8:87880120-88734779	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3395182	chr8:87963885-87993322	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3414235	chr8:87963885-88009182	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87964200-87965200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:87964400-87966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:87964400-87966200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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