Variant report

Variant	rs12156215
Chromosome Location	chr8:87181962-87181963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87180089..87182207-chr8:87303826..87306523,2	MCF-7	breast:
2	chr8:87180045..87182369-chr8:87352740..87355498,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction
ENSG00000254231	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs12115123	0.81[EUR][1000 genomes]
rs12155639	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12155804	0.86[EUR][1000 genomes]
rs12155824	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12155882	0.84[EUR][1000 genomes]
rs12155894	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12156219	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12541053	0.85[EUR][1000 genomes]
rs12541292	0.83[EUR][1000 genomes]
rs12541468	0.85[EUR][1000 genomes]
rs12541480	0.85[EUR][1000 genomes]
rs12541499	0.85[EUR][1000 genomes]
rs12544098	0.83[EUR][1000 genomes]
rs12546120	0.83[EUR][1000 genomes]
rs12546618	0.83[EUR][1000 genomes]
rs12548440	0.85[EUR][1000 genomes]
rs13259716	0.85[EUR][1000 genomes]
rs13265507	0.84[EUR][1000 genomes]
rs13267165	0.83[EUR][1000 genomes]
rs13267261	0.85[EUR][1000 genomes]
rs13268911	0.83[EUR][1000 genomes]
rs13272119	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13272356	0.85[EUR][1000 genomes]
rs13272593	0.84[EUR][1000 genomes]
rs13276090	0.86[EUR][1000 genomes]
rs13276129	0.86[EUR][1000 genomes]
rs13282492	0.83[EUR][1000 genomes]
rs33979484	0.86[EUR][1000 genomes]
rs34122951	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34522097	0.83[EUR][1000 genomes]
rs34660447	0.85[EUR][1000 genomes]
rs34683419	0.85[EUR][1000 genomes]
rs34733066	0.83[EUR][1000 genomes]
rs34744391	0.85[EUR][1000 genomes]
rs34844115	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34847457	0.83[EUR][1000 genomes]
rs35141817	0.85[EUR][1000 genomes]
rs35174822	0.85[EUR][1000 genomes]
rs35236744	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35292130	0.83[EUR][1000 genomes]
rs35332272	0.85[EUR][1000 genomes]
rs35715881	0.85[EUR][1000 genomes]
rs35825431	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35844270	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35978872	0.85[EUR][1000 genomes]
rs35988481	0.86[EUR][1000 genomes]
rs4076880	0.85[EUR][1000 genomes]
rs4076881	0.85[EUR][1000 genomes]
rs4311641	0.85[EUR][1000 genomes]
rs4319071	0.83[EUR][1000 genomes]
rs4355748	0.83[EUR][1000 genomes]
rs4443642	0.86[EUR][1000 genomes]
rs4480105	0.85[EUR][1000 genomes]
rs4515529	0.83[EUR][1000 genomes]
rs4571715	0.83[EUR][1000 genomes]
rs4581031	0.86[EUR][1000 genomes]
rs58965951	0.85[EUR][1000 genomes]
rs59777373	0.85[EUR][1000 genomes]
rs6470428	0.85[EUR][1000 genomes]
rs67650717	0.86[EUR][1000 genomes]
rs6982731	0.83[EUR][1000 genomes]
rs7017607	0.83[EUR][1000 genomes]
rs72606619	0.86[EUR][1000 genomes]
rs72606620	0.86[EUR][1000 genomes]
rs72606621	0.86[EUR][1000 genomes]
rs72606622	0.85[EUR][1000 genomes]
rs72606623	0.86[EUR][1000 genomes]
rs72606624	0.86[EUR][1000 genomes]
rs72606625	0.86[EUR][1000 genomes]
rs72606626	0.85[EUR][1000 genomes]
rs72606627	0.86[EUR][1000 genomes]
rs72606629	0.85[EUR][1000 genomes]
rs7461255	0.85[EUR][1000 genomes]
rs7823544	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7825985	0.85[EUR][1000 genomes]
rs7827938	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7846210	0.85[EUR][1000 genomes]
rs9969464	0.86[EUR][1000 genomes]
rs9969498	0.86[EUR][1000 genomes]
rs9969499	0.86[EUR][1000 genomes]
rs9969529	0.85[EUR][1000 genomes]
rs9969581	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9969582	0.86[EUR][1000 genomes]
rs9969612	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9969617	0.86[EUR][1000 genomes]
rs9969667	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv611674	chr8:87156172-87315920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027648	chr8:87161437-87319476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv1815028	chr8:87166396-87205568	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1020485	chr8:87167184-87330873	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1023114	chr8:87167184-87335197	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1033960	chr8:87167790-87334194	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1016050	chr8:87167790-87335197	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv972215	chr8:87172741-87187057	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv6290	chr8:87175740-87229808	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1016177	chr8:87177368-87319476	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv1023772	chr8:87177368-87334194	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv1031874	chr8:87177368-87335197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
18	nsv1030401	chr8:87177368-87337260	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87180000-87185400	Weak transcription	HepG2	liver
2	chr8:87180000-87187400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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