Variant report

Variant	rs12156570
Chromosome Location	chr9:16502366-16502367
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10118463	0.80[ASN][1000 genomes]
rs10810571	0.81[ASN][1000 genomes]
rs10810572	0.90[ASN][1000 genomes]
rs10810573	0.90[ASN][1000 genomes]
rs10962457	0.90[ASN][1000 genomes]
rs10962458	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10962459	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10962461	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962463	0.83[ASN][1000 genomes]
rs10962468	0.85[ASN][1000 genomes]
rs10962470	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1927631	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs66580280	0.81[ASN][1000 genomes]
rs7020843	0.81[ASN][1000 genomes]
rs7849139	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv892646	chr9:16476144-16514375	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv892647	chr9:16476144-16521534	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv466265	chr9:16484731-16516941	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613670	chr9:16484731-16516941	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16471000-16504600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16483200-16513600	Weak transcription	Psoas Muscle	Psoas
3	chr9:16485000-16504800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:16485400-16505000	Weak transcription	HSMMtube	muscle
5	chr9:16485800-16505800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16488200-16504600	Weak transcription	Fetal Stomach	stomach
7	chr9:16488200-16505200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:16488800-16505000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:16489000-16504800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:16494000-16505000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:16494600-16504600	Weak transcription	Fetal Lung	lung
12	chr9:16495200-16509800	Weak transcription	Aorta	Aorta
13	chr9:16497200-16503000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:16497200-16504800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:16499600-16502400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:16499800-16502400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:16499800-16502400	Enhancers	NH-A	brain
18	chr9:16499800-16502800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:16500000-16502400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:16500000-16502400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:16500000-16502400	Enhancers	HSMM	muscle
22	chr9:16500000-16502400	Enhancers	NHDF-Ad	bronchial
23	chr9:16500000-16505000	Enhancers	Osteobl	bone
24	chr9:16500000-16506400	Enhancers	HUVEC	blood vessel
25	chr9:16500200-16506600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:16500400-16514000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:16501600-16502400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr9:16501600-16504400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:16501600-16504800	Weak transcription	A549	lung
30	chr9:16501800-16502400	Enhancers	Ovary	ovary
31	chr9:16501800-16504600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:16502000-16504600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:16502000-16505400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:16502200-16503600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr9:16502200-16504000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:16502200-16504000	Weak transcription	Hela-S3	cervix
37	chr9:16502200-16504000	Weak transcription	NHLF	lung
38	chr9:16502200-16505000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:16502200-16505000	Weak transcription	NHEK	skin
40	chr9:16502200-16510000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr9:16502200-16510000	Weak transcription	HMEC	breast

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