Variant report

Variant	rs7849139
Chromosome Location	chr9:16507737-16507738
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10117527	0.80[ASN][1000 genomes]
rs10118463	0.82[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs10118467	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10119184	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10119249	0.84[ASN][1000 genomes]
rs10122434	0.88[ASN][1000 genomes]
rs10123674	0.89[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10124550	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10124554	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10124761	0.82[YRI][hapmap]
rs10756756	0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10756760	0.84[CHB][hapmap]
rs10810572	0.81[ASN][1000 genomes]
rs10810573	0.83[ASN][1000 genomes]
rs10962457	0.81[ASN][1000 genomes]
rs10962461	0.90[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs10962468	0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10962470	0.94[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10962474	0.85[MEX][hapmap]
rs10962477	0.84[CHB][hapmap]
rs12156570	0.90[ASN][1000 genomes]
rs12377857	0.87[ASN][1000 genomes]
rs1927631	0.89[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs28555116	0.85[ASN][1000 genomes]
rs4961723	0.84[CHB][hapmap]
rs7021958	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs7024707	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7028447	0.83[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7028503	0.88[ASN][1000 genomes]
rs7028666	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7031602	0.85[TSI][hapmap]
rs7033269	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7043485	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs7044580	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs73417442	0.86[ASN][1000 genomes]
rs7848343	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7848584	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7848696	0.92[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv892646	chr9:16476144-16514375	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv892647	chr9:16476144-16521534	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv466265	chr9:16484731-16516941	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613670	chr9:16484731-16516941	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16483200-16513600	Weak transcription	Psoas Muscle	Psoas
2	chr9:16495200-16509800	Weak transcription	Aorta	Aorta
3	chr9:16500400-16514000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:16502200-16510000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:16502200-16510000	Weak transcription	HMEC	breast
6	chr9:16502400-16509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:16505400-16510000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:16505400-16510200	Weak transcription	NHEK	skin
9	chr9:16505400-16514000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:16505600-16509200	Weak transcription	Ovary	ovary
11	chr9:16505600-16510000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:16505600-16510000	Weak transcription	HSMMtube	muscle
13	chr9:16505800-16510000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:16506000-16509400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:16506000-16509400	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:16506000-16509800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:16506000-16509800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:16506000-16509800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:16506000-16509800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:16506000-16509800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:16506000-16509800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:16506000-16510000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:16506000-16513600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr9:16506000-16514200	Weak transcription	NHDF-Ad	bronchial
25	chr9:16506000-16515200	Weak transcription	Adipose Nuclei	Adipose
26	chr9:16506200-16509600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:16506200-16509600	Weak transcription	Fetal Stomach	stomach
28	chr9:16506200-16509800	Weak transcription	HSMM	muscle
29	chr9:16506200-16509800	Weak transcription	NH-A	brain
30	chr9:16506200-16515000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:16506400-16509200	Weak transcription	HUVEC	blood vessel
32	chr9:16506400-16509400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr9:16506400-16509600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:16506400-16509800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:16506400-16509800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:16506400-16509800	Weak transcription	A549	lung
37	chr9:16506400-16509800	Weak transcription	Hela-S3	cervix
38	chr9:16506400-16509800	Weak transcription	NHLF	lung
39	chr9:16506400-16510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr9:16506400-16510000	Weak transcription	Osteobl	bone
41	chr9:16506400-16510200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr9:16506400-16510200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr9:16506400-16510200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:16506600-16508000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:16506600-16510000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr9:16506600-16514000	Weak transcription	Fetal Lung	lung
47	chr9:16507000-16509800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:16507000-16510000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:16507400-16508600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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