Variant report

Variant	rs7033269
Chromosome Location	chr9:16513641-16513642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10117527	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10118463	0.86[EUR][1000 genomes]
rs10118467	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10119249	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10122434	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10123674	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10124550	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10124554	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10756756	0.83[ASN][1000 genomes]
rs10962468	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12377857	0.95[ASN][1000 genomes]
rs28555116	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7024707	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7028447	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7028503	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7028666	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7043485	0.87[AFR][1000 genomes]
rs7044580	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73417442	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7848343	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7848584	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7848696	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7849139	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7863830	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv892646	chr9:16476144-16514375	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv892647	chr9:16476144-16521534	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv466265	chr9:16484731-16516941	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613670	chr9:16484731-16516941	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16500400-16514000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:16505400-16514000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:16506000-16514200	Weak transcription	NHDF-Ad	bronchial
4	chr9:16506000-16515200	Weak transcription	Adipose Nuclei	Adipose
5	chr9:16506200-16515000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16506600-16514000	Weak transcription	Fetal Lung	lung
7	chr9:16510200-16514800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:16510200-16515000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:16510200-16515200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:16510200-16515400	Weak transcription	Aorta	Aorta
11	chr9:16510400-16513800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:16510400-16513800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:16510400-16513800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:16510400-16513800	Weak transcription	Fetal Stomach	stomach
15	chr9:16510400-16514000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:16510400-16514000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:16510400-16514000	Weak transcription	HSMMtube	muscle
18	chr9:16510400-16514200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:16510400-16515000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:16510400-16515200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:16510600-16514000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:16510600-16514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:16510600-16514000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:16510600-16514000	Weak transcription	HSMM	muscle
25	chr9:16510600-16514800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:16510600-16514800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr9:16510600-16514800	Weak transcription	NH-A	brain
28	chr9:16510600-16515000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr9:16510800-16513800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:16510800-16514000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:16510800-16514000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:16510800-16514000	Weak transcription	Osteobl	bone
33	chr9:16510800-16514200	Weak transcription	A549	lung
34	chr9:16511000-16513800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:16511000-16514000	Weak transcription	Colon Smooth Muscle	Colon
36	chr9:16511000-16515000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:16511200-16513800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr9:16511200-16514000	Weak transcription	NHLF	lung
39	chr9:16511400-16514800	Weak transcription	HUVEC	blood vessel
40	chr9:16512000-16515400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:16512400-16517400	Enhancers	Ovary	ovary
42	chr9:16512600-16514000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr9:16512800-16514200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:16513000-16515400	Weak transcription	Gastric	stomach
45	chr9:16513400-16514000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr9:16513600-16514200	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr9:16513600-16514400	Enhancers	Psoas Muscle	Psoas
48	chr9:16513600-16514600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr9:16513600-16515200	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr9:16513600-16517200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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