Variant report

Variant	rs12165604
Chromosome Location	chr22:30895483-30895484
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11912737	0.85[EUR][1000 genomes]
rs16988720	0.86[EUR][1000 genomes]
rs1807514	0.86[EUR][1000 genomes]
rs1859479	0.85[EUR][1000 genomes]
rs2412989	0.86[EUR][1000 genomes]
rs2412990	0.85[EUR][1000 genomes]
rs6518692	0.85[EUR][1000 genomes]
rs6518693	0.86[EUR][1000 genomes]
rs6518695	0.86[EUR][1000 genomes]
rs6518698	0.84[EUR][1000 genomes]
rs7285878	0.85[EUR][1000 genomes]
rs7287135	0.86[EUR][1000 genomes]
rs7287596	0.86[EUR][1000 genomes]
rs7291870	0.85[EUR][1000 genomes]
rs737940	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8136225	0.85[EUR][1000 genomes]
rs8136992	0.85[EUR][1000 genomes]
rs8141108	0.86[EUR][1000 genomes]
rs8141286	0.86[EUR][1000 genomes]
rs8141428	0.86[EUR][1000 genomes]
rs878306	0.84[EUR][1000 genomes]
rs886615	0.85[EUR][1000 genomes]
rs886616	0.85[EUR][1000 genomes]
rs886617	0.84[EUR][1000 genomes]
rs9306262	0.86[EUR][1000 genomes]
rs9606744	0.86[EUR][1000 genomes]
rs9606745	0.86[EUR][1000 genomes]
rs9606747	0.86[EUR][1000 genomes]
rs9606749	0.85[EUR][1000 genomes]
rs9608946	0.83[AMR][1000 genomes]
rs9608956	0.86[EUR][1000 genomes]
rs9608960	0.86[EUR][1000 genomes]
rs9608964	0.85[EUR][1000 genomes]
rs9608966	0.86[EUR][1000 genomes]
rs9608967	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv3413089	chr22:30888110-30921604	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30883400-30901200	Weak transcription	A549	lung
2	chr22:30891800-30901200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:30894000-30898200	Weak transcription	HepG2	liver
4	chr22:30895200-30895600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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