Variant report

Variant	rs12168499
Chromosome Location	chr22:30521447-30521448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10048885	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11090598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12167333	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12171061	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12171250	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12171263	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17648725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1807509	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs193473	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs193481	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1978083	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2017677	0.84[EUR][1000 genomes]
rs2051764	0.84[EUR][1000 genomes]
rs2412960	0.81[EUR][1000 genomes]
rs2412963	0.83[EUR][1000 genomes]
rs28257	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36580	0.81[AMR][1000 genomes]
rs36590	0.81[AMR][1000 genomes]
rs36591	0.81[AMR][1000 genomes]
rs36594	0.81[AMR][1000 genomes]
rs36596	0.81[AMR][1000 genomes]
rs36598	0.81[AMR][1000 genomes]
rs36600	0.81[AMR][1000 genomes]
rs36601	0.81[AMR][1000 genomes]
rs36605	0.81[AMR][1000 genomes]
rs36607	0.81[AMR][1000 genomes]
rs3788423	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs39712	0.81[AMR][1000 genomes]
rs41164	0.82[EUR][1000 genomes]
rs41166	0.82[EUR][1000 genomes]
rs41175	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41179	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4239932	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4239933	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4337577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4823070	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5752986	0.82[EUR][1000 genomes]
rs5752988	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5752993	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5763634	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5763644	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5763674	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5763675	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5763680	0.84[EUR][1000 genomes]
rs5763689	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs715523	0.83[EUR][1000 genomes]
rs718772	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs737904	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs737909	0.84[EUR][1000 genomes]
rs7510705	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8135823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8138286	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8141404	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8141765	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9620943	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9620953	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625919	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9625926	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9625931	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9625933	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625935	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834173	chr22:30515092-30658277	Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30519200-30525400	Weak transcription	A549	lung
2	chr22:30519600-30523800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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