Variant report

Variant	rs9625919
Chromosome Location	chr22:30500958-30500959
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30500122..30506829-chr22:30640771..30648697,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268812	Chromatin interaction
ENSG00000128342	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10048885	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11090598	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12167333	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12168499	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12171061	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12171250	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12171263	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17648725	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1807509	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs193473	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs193481	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1978083	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2017677	0.84[EUR][1000 genomes]
rs2051764	0.84[EUR][1000 genomes]
rs2412960	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2412963	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs28257	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36580	0.83[AMR][1000 genomes]
rs36590	0.83[AMR][1000 genomes]
rs36591	0.83[AMR][1000 genomes]
rs36594	0.83[AMR][1000 genomes]
rs36596	0.83[AMR][1000 genomes]
rs36598	0.83[AMR][1000 genomes]
rs36600	0.95[CEU][hapmap];0.83[AMR][1000 genomes]
rs36601	0.83[AMR][1000 genomes]
rs36604	0.95[CEU][hapmap];0.82[AMR][1000 genomes]
rs36605	0.83[AMR][1000 genomes]
rs36606	0.82[AMR][1000 genomes]
rs36607	0.83[AMR][1000 genomes]
rs3788423	0.95[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs39712	0.83[AMR][1000 genomes]
rs41162	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs41164	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs41166	0.82[EUR][1000 genomes]
rs41172	0.87[CEU][hapmap]
rs41174	0.87[CEU][hapmap]
rs41175	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41177	0.80[CEU][hapmap]
rs41179	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4239932	0.95[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4239933	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4337577	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4823063	0.96[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs4823070	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5752986	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5752988	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5752993	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5763634	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5763644	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5763674	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5763675	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5763680	0.84[EUR][1000 genomes]
rs5763689	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs715523	0.83[EUR][1000 genomes]
rs718772	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs737904	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs737909	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs737912	0.96[CEU][hapmap]
rs7510705	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8135823	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8136147	0.81[AMR][1000 genomes]
rs8138286	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8141404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8141765	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9614162	0.82[YRI][hapmap]
rs9620943	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9620953	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9625926	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9625931	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9625933	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9625935	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30498000-30501000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr22:30498000-30501000	Weak transcription	Thymus	Thymus
3	chr22:30499400-30501800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr22:30499400-30502000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr22:30499800-30501400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr22:30499800-30501600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr22:30499800-30501800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr22:30499800-30502000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr22:30500000-30501800	Enhancers	Primary T cells from cord blood	blood
10	chr22:30500000-30501800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr22:30500000-30502000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr22:30500200-30501200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr22:30500200-30501200	Enhancers	NH-A	brain
14	chr22:30500200-30501400	Enhancers	Primary hematopoietic stem cells	blood
15	chr22:30500200-30501400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr22:30500200-30501600	Enhancers	HSMM	muscle
17	chr22:30500200-30501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr22:30500400-30501000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr22:30500400-30501200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr22:30500400-30501200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr22:30500400-30501400	Enhancers	Fetal Thymus	thymus
22	chr22:30500400-30501800	Enhancers	Osteobl	bone
23	chr22:30500400-30502000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr22:30500600-30501000	Enhancers	Dnd41	blood
25	chr22:30500600-30501400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr22:30500600-30501800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr22:30500800-30501200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr22:30500800-30501800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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