Variant report

Variant	rs41174
Chromosome Location	chr22:30426069-30426070
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:30414773..30416390-chr22:30425475..30427413,2	MCF-7	breast:
2	chr22:30421588..30423711-chr22:30425219..30427810,2	K562	blood:
3	chr22:30421468..30423711-chr22:30425219..30428106,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HORMAD2-3	chr22:30425440-30426316	NONHSAT084752

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12537	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs2412960	0.82[CEU][hapmap]
rs2412963	0.82[CEU][hapmap]
rs28257	0.95[ASN][1000 genomes]
rs36600	0.86[CEU][hapmap]
rs36604	0.86[CEU][hapmap]
rs3788423	0.86[CEU][hapmap]
rs3887275	0.82[CEU][hapmap]
rs41162	0.91[CEU][hapmap]
rs41164	0.86[CEU][hapmap]
rs41172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41175	0.95[ASN][1000 genomes]
rs41177	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs41178	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41179	0.95[ASN][1000 genomes]
rs4239932	0.86[CEU][hapmap]
rs4337577	0.86[ASN][1000 genomes]
rs4823063	0.82[CEU][hapmap]
rs4823070	0.86[ASN][1000 genomes]
rs718772	0.91[CEU][hapmap]
rs737909	0.86[CEU][hapmap]
rs737912	0.82[CEU][hapmap]
rs7510705	0.86[ASN][1000 genomes]
rs8141404	0.91[CEU][hapmap]
rs9620943	0.90[ASN][1000 genomes]
rs9625919	0.87[CEU][hapmap]
rs9625921	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30363400-30427800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr22:30367000-30426600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr22:30390200-30434200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr22:30391400-30433000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr22:30394800-30426200	Strong transcription	Placenta	Placenta
6	chr22:30396800-30426200	Strong transcription	Primary B cells from cord blood	blood
7	chr22:30398000-30426200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:30402600-30426200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr22:30404400-30426400	Strong transcription	Primary T cells from cord blood	blood
10	chr22:30406000-30426600	Strong transcription	Thymus	Thymus
11	chr22:30409000-30432800	Strong transcription	Fetal Stomach	stomach
12	chr22:30412000-30431200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr22:30416400-30427200	Weak transcription	K562	blood
14	chr22:30419600-30434400	Weak transcription	Small Intestine	intestine
15	chr22:30419800-30427200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr22:30421400-30426200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr22:30422200-30429000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr22:30422400-30426400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
19	chr22:30422400-30427800	Weak transcription	Psoas Muscle	Psoas
20	chr22:30422400-30434200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr22:30422400-30434200	Weak transcription	HUVEC	blood vessel
22	chr22:30422800-30429600	Weak transcription	NHDF-Ad	bronchial
23	chr22:30422800-30429800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr22:30423000-30429600	Weak transcription	Fetal Heart	heart
25	chr22:30423000-30432600	Weak transcription	NH-A	brain
26	chr22:30423400-30426200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr22:30423400-30426200	Strong transcription	Lung	lung
28	chr22:30423400-30426400	Weak transcription	HepG2	liver
29	chr22:30423400-30429400	Weak transcription	Colon Smooth Muscle	Colon
30	chr22:30423400-30429600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr22:30423400-30429600	Weak transcription	GM12878-XiMat	blood
32	chr22:30423400-30430800	Strong transcription	Fetal Intestine Small	intestine
33	chr22:30423400-30432400	Weak transcription	Stomach Mucosa	stomach
34	chr22:30423400-30434400	Weak transcription	A549	lung
35	chr22:30423600-30447600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr22:30423800-30427200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr22:30424200-30426200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr22:30424200-30426400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr22:30424200-30429600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr22:30424200-30429800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr22:30424200-30434000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr22:30424400-30426600	Enhancers	Liver	Liver
43	chr22:30424400-30429400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr22:30424400-30429800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr22:30424400-30431400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr22:30424600-30426400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr22:30424600-30427000	Weak transcription	Ovary	ovary
48	chr22:30424600-30427600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr22:30424600-30429600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr22:30424600-30429800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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