Variant report

Variant	rs12171630
Chromosome Location	chr7:81066478-81066479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57489923	1.00[AMR][1000 genomes]
rs60496738	1.00[AMR][1000 genomes]
rs73380461	1.00[AMR][1000 genomes]
rs73380484	1.00[AMR][1000 genomes]
rs73380488	1.00[AMR][1000 genomes]
rs73380497	1.00[AMR][1000 genomes]
rs73382425	1.00[AMR][1000 genomes]
rs73382430	1.00[AMR][1000 genomes]
rs73382449	1.00[AMR][1000 genomes]
rs73384635	1.00[AMR][1000 genomes]
rs73384637	1.00[AMR][1000 genomes]
rs73384641	1.00[AMR][1000 genomes]
rs73384643	1.00[AMR][1000 genomes]
rs9656505	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:81060000-81066800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:81063600-81085400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:81066400-81066800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links