Variant report

Variant	rs73384641
Chromosome Location	chr7:80967067-80967068
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11978959	1.00[AMR][1000 genomes]
rs12171630	1.00[AMR][1000 genomes]
rs17154991	1.00[AMR][1000 genomes]
rs17154997	1.00[AMR][1000 genomes]
rs57489923	1.00[AMR][1000 genomes]
rs59953946	1.00[AMR][1000 genomes]
rs60496738	1.00[AMR][1000 genomes]
rs73380413	1.00[AMR][1000 genomes]
rs73380419	1.00[AMR][1000 genomes]
rs73380447	1.00[AMR][1000 genomes]
rs73380461	1.00[AMR][1000 genomes]
rs73380484	1.00[AMR][1000 genomes]
rs73380488	1.00[AMR][1000 genomes]
rs73380497	1.00[AMR][1000 genomes]
rs73382425	1.00[AMR][1000 genomes]
rs73382430	1.00[AMR][1000 genomes]
rs73382449	1.00[AMR][1000 genomes]
rs73384635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384643	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656505	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831045	chr7:80841693-81012404	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80963200-80967400	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:80963200-80969200	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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