Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11971593	1.00[AMR][1000 genomes]
rs11972924	1.00[AMR][1000 genomes]
rs11974217	1.00[AMR][1000 genomes]
rs11977802	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981679	1.00[AMR][1000 genomes]
rs17154991	1.00[AMR][1000 genomes]
rs17154997	1.00[AMR][1000 genomes]
rs28513218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57489923	1.00[AMR][1000 genomes]
rs59953946	1.00[AMR][1000 genomes]
rs60496738	1.00[AMR][1000 genomes]
rs73380413	1.00[AMR][1000 genomes]
rs73380419	1.00[AMR][1000 genomes]
rs73380447	1.00[AMR][1000 genomes]
rs73380461	1.00[AMR][1000 genomes]
rs73380484	1.00[AMR][1000 genomes]
rs73380488	1.00[AMR][1000 genomes]
rs73380497	1.00[AMR][1000 genomes]
rs73382425	1.00[AMR][1000 genomes]
rs73382430	1.00[AMR][1000 genomes]
rs73382449	1.00[AMR][1000 genomes]
rs73384635	1.00[AMR][1000 genomes]
rs73384637	1.00[AMR][1000 genomes]
rs73384641	1.00[AMR][1000 genomes]
rs73384643	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80803600-80810600	Weak transcription	HepG2	liver
2	chr7:80803800-80819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:80805000-80819800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:80808600-80810800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr7:80808600-80811600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr7:80808800-80810800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr7:80809400-80810200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr7:80810000-80810800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:80810000-80811800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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