Variant report

Variant	rs11981533
Chromosome Location	chr7:80785483-80785484
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80779464..80781511-chr7:80784882..80787080,2	MCF-7	breast:
2	chr7:80783452..80785528-chr7:80926720..80928385,2	MCF-7	breast:
3	chr7:80781349..80783121-chr7:80784123..80785683,2	K562	blood:
4	chr7:80781139..80783357-chr7:80784311..80786613,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11971593	1.00[AMR][1000 genomes]
rs11972924	1.00[AMR][1000 genomes]
rs11974217	1.00[AMR][1000 genomes]
rs11977802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11981679	1.00[AMR][1000 genomes]
rs17154991	1.00[AMR][1000 genomes]
rs17154997	1.00[AMR][1000 genomes]
rs28513218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57489923	1.00[AMR][1000 genomes]
rs59953946	1.00[AMR][1000 genomes]
rs60496738	1.00[AMR][1000 genomes]
rs73380413	1.00[AMR][1000 genomes]
rs73380419	1.00[AMR][1000 genomes]
rs73380447	1.00[AMR][1000 genomes]
rs73380461	1.00[AMR][1000 genomes]
rs73380484	1.00[AMR][1000 genomes]
rs73380488	1.00[AMR][1000 genomes]
rs73380497	1.00[AMR][1000 genomes]
rs73382425	1.00[AMR][1000 genomes]
rs73382430	1.00[AMR][1000 genomes]
rs73382449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80780600-80787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:80780600-80791000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:80781200-80790000	Weak transcription	HSMM	muscle
4	chr7:80783000-80788400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:80783000-80788600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:80783200-80787800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:80783200-80788200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:80783400-80788000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:80783600-80785600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:80783600-80785600	Enhancers	Fetal Intestine Small	intestine
11	chr7:80784000-80787600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:80784000-80788000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:80784200-80785800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:80784200-80788600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:80784200-80789000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:80784400-80785600	Enhancers	HMEC	breast
17	chr7:80784400-80788800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:80784800-80785800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr7:80784800-80785800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:80785000-80785600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr7:80785000-80785600	Enhancers	Fetal Kidney	kidney
22	chr7:80785000-80785600	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr7:80785000-80785600	Enhancers	NH-A	brain
24	chr7:80785000-80785800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr7:80785200-80785600	Enhancers	Brain Anterior Caudate	brain
26	chr7:80785200-80785600	Active TSS	Duodenum Mucosa	Duodenum
27	chr7:80785200-80785600	Active TSS	Fetal Intestine Large	intestine
28	chr7:80785200-80785600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr7:80785200-80785600	Active TSS	Rectal Mucosa Donor 31	rectum
30	chr7:80785200-80785800	Active TSS	A549	lung
31	chr7:80785200-80790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:80785200-80796400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:80785400-80785600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr7:80785400-80785600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr7:80785400-80785600	Flanking Active TSS	Liver	Liver
36	chr7:80785400-80785800	Flanking Active TSS	HepG2	liver

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