Variant report
| Variant | rs11972924 |
|---|---|
| Chromosome Location | chr7:80765215-80765216 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11971593 | 1.00[AMR][1000 genomes] |
| rs11974217 | 1.00[AMR][1000 genomes] |
| rs11977802 | 1.00[AMR][1000 genomes] |
| rs11978959 | 1.00[AMR][1000 genomes] |
| rs11981533 | 1.00[AMR][1000 genomes] |
| rs11981679 | 1.00[AMR][1000 genomes] |
| rs17154991 | 1.00[AMR][1000 genomes] |
| rs17154997 | 1.00[AMR][1000 genomes] |
| rs28513218 | 1.00[AMR][1000 genomes] |
| rs57489923 | 1.00[AMR][1000 genomes] |
| rs59953946 | 1.00[AMR][1000 genomes] |
| rs60496738 | 1.00[AMR][1000 genomes] |
| rs73380413 | 1.00[AMR][1000 genomes] |
| rs73380419 | 1.00[AMR][1000 genomes] |
| rs73380447 | 1.00[AMR][1000 genomes] |
| rs73380461 | 1.00[AMR][1000 genomes] |
| rs73380484 | 1.00[AMR][1000 genomes] |
| rs73380488 | 1.00[AMR][1000 genomes] |
| rs73380497 | 1.00[AMR][1000 genomes] |
| rs73382425 | 1.00[AMR][1000 genomes] |
| rs73382430 | 1.00[AMR][1000 genomes] |
| rs73382449 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034690 | chr7:80520004-80987682 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv888553 | chr7:80683308-80766407 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv888555 | chr7:80695828-80766407 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv888556 | chr7:80695828-80797794 | Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv831044 | chr7:80721773-80918591 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:80763200-80780200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
