Variant report

Variant	rs12174849
Chromosome Location	chr6:147288705-147288706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17076452	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4143743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58553228	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62435580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913775	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9322083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147283400-147288800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:147287000-147288800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:147288200-147289000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:147288200-147291000	Enhancers	Fetal Heart	heart
5	chr6:147288600-147289200	Enhancers	Hela-S3	cervix
6	chr6:147288600-147289400	Enhancers	Colon Smooth Muscle	Colon
7	chr6:147288600-147289800	Enhancers	Osteobl	bone
8	chr6:147288600-147290000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:147288600-147290200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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