Variant report

Variant	rs17076452
Chromosome Location	chr6:147268121-147268122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147255283..147257003-chr6:147267757..147269418,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10499242	0.87[ASN][1000 genomes]
rs10499244	0.87[ASN][1000 genomes]
rs10499245	0.87[ASN][1000 genomes]
rs11966340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11966941	0.87[ASN][1000 genomes]
rs12174849	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12660458	0.87[ASN][1000 genomes]
rs12661319	1.00[ASN][1000 genomes]
rs12662397	0.83[ASN][1000 genomes]
rs12663509	0.87[ASN][1000 genomes]
rs12664925	0.87[ASN][1000 genomes]
rs12665457	1.00[ASN][1000 genomes]
rs12665594	1.00[ASN][1000 genomes]
rs12665649	1.00[ASN][1000 genomes]
rs17076429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17076435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17076442	1.00[ASN][1000 genomes]
rs17076444	1.00[ASN][1000 genomes]
rs17076474	0.83[ASN][1000 genomes]
rs17076499	0.87[ASN][1000 genomes]
rs17076505	0.87[ASN][1000 genomes]
rs17076507	0.87[ASN][1000 genomes]
rs17076510	0.87[ASN][1000 genomes]
rs17076512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17076522	0.87[ASN][1000 genomes]
rs17076531	0.87[ASN][1000 genomes]
rs17076533	0.87[ASN][1000 genomes]
rs17076538	0.87[ASN][1000 genomes]
rs17076540	0.87[ASN][1000 genomes]
rs1852797	0.83[ASN][1000 genomes]
rs4143743	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58553228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62435580	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6910157	0.83[ASN][1000 genomes]
rs6913775	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6915087	1.00[ASN][1000 genomes]
rs9322083	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2760996	chr6:147229457-147269633	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1846046	chr6:147258908-147271295	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147265600-147276600	Weak transcription	Pancreas	Pancrea
2	chr6:147266400-147268800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr6:147267400-147271600	Weak transcription	Small Intestine	intestine
4	chr6:147268000-147269600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:147268000-147271000	Weak transcription	HepG2	liver

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