Variant report

Variant	rs17076531
Chromosome Location	chr6:147312430-147312431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147300256..147303345-chr6:147310924..147313456,3	K562	blood:
2	chr6:147303393..147305875-chr6:147310244..147312438,2	K562	blood:
3	chr6:147310658..147313330-chr6:147334680..147336294,2	K562	blood:
4	chr6:147299638..147302569-chr6:147311895..147314452,2	K562	blood:
5	chr6:147312045..147314178-chr6:147315650..147317217,2	K562	blood:
6	chr6:147312426..147314178-chr6:147315717..147317793,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10499242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966340	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660458	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661319	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12661587	0.82[EUR][1000 genomes]
rs12662397	0.97[ASN][1000 genomes]
rs12663509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665457	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665594	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665649	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17076435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076442	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076444	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076452	0.87[ASN][1000 genomes]
rs17076474	0.97[ASN][1000 genomes]
rs17076499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17076522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076538	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076540	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852797	0.97[ASN][1000 genomes]
rs58553228	0.87[ASN][1000 genomes]
rs6910157	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915087	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147310200-147313600	Enhancers	Hela-S3	cervix
2	chr6:147310200-147313800	Enhancers	HepG2	liver
3	chr6:147310600-147313400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:147310800-147313000	Enhancers	Osteobl	bone
5	chr6:147311400-147312600	Enhancers	NH-A	brain
6	chr6:147311400-147312800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:147311400-147313400	Enhancers	K562	blood
8	chr6:147311400-147313400	Enhancers	NHDF-Ad	bronchial
9	chr6:147311400-147313800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:147311400-147321200	Weak transcription	HSMM	muscle
11	chr6:147311800-147312600	Enhancers	Fetal Intestine Small	intestine
12	chr6:147311800-147318000	Weak transcription	NHLF	lung
13	chr6:147312000-147312600	Weak transcription	A549	lung
14	chr6:147312000-147312800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:147312200-147312600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:147312200-147313000	Enhancers	HUVEC	blood vessel
17	chr6:147312200-147313400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:147312400-147312600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:147312400-147312600	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:147312400-147312800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links