Variant report

Variant	rs11966340
Chromosome Location	chr6:147351109-147351110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147343648..147348128-chr6:147350365..147353896,5	K562	blood:
2	chr6:147349230..147351388-chr6:147452401..147455379,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10499242	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499244	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499245	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966941	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660458	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661319	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12662397	0.97[ASN][1000 genomes]
rs12663509	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664925	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665457	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665594	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665649	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17076435	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076442	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076444	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076452	0.87[ASN][1000 genomes]
rs17076474	0.97[ASN][1000 genomes]
rs17076499	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076505	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076507	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076510	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17076522	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076531	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076533	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076538	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076540	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852797	0.97[ASN][1000 genomes]
rs58553228	0.87[ASN][1000 genomes]
rs6910157	0.97[ASN][1000 genomes]
rs6915087	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73586198	0.86[AFR][1000 genomes]
rs7753437	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147343800-147364800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:147350600-147351200	Enhancers	Liver	Liver

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