Variant report
| Variant | rs17076429 |
|---|---|
| Chromosome Location | chr6:147251474-147251475 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:147249918..147252907-chr6:147523590..147525925,2 | K562 | blood: | |
| 2 | chr6:147230247..147234342-chr6:147246927..147253758,6 | K562 | blood: | |
| 3 | chr6:147250308..147252005-chr6:147252419..147255385,2 | K562 | blood: | |
| 4 | chr6:147240380..147243056-chr6:147250976..147252874,2 | K562 | blood: | |
| 5 | chr6:147251390..147254313-chr6:147527103..147529241,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164506 | Chromatin interaction |
| ENSG00000233452 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10499242 | 0.81[ASN][1000 genomes] |
| rs10499244 | 0.81[ASN][1000 genomes] |
| rs10499245 | 0.81[ASN][1000 genomes] |
| rs11966340 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11966941 | 0.81[ASN][1000 genomes] |
| rs12660458 | 0.81[ASN][1000 genomes] |
| rs12661319 | 0.93[ASN][1000 genomes] |
| rs12662397 | 0.83[ASN][1000 genomes] |
| rs12663509 | 0.81[ASN][1000 genomes] |
| rs12664925 | 0.81[ASN][1000 genomes] |
| rs12665457 | 0.93[ASN][1000 genomes] |
| rs12665594 | 0.93[ASN][1000 genomes] |
| rs12665649 | 0.93[ASN][1000 genomes] |
| rs17076435 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs17076442 | 0.93[ASN][1000 genomes] |
| rs17076444 | 0.93[ASN][1000 genomes] |
| rs17076452 | 0.93[ASN][1000 genomes] |
| rs17076474 | 0.83[ASN][1000 genomes] |
| rs17076499 | 0.81[ASN][1000 genomes] |
| rs17076505 | 0.81[ASN][1000 genomes] |
| rs17076507 | 0.81[ASN][1000 genomes] |
| rs17076510 | 0.81[ASN][1000 genomes] |
| rs17076512 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs17076522 | 0.81[ASN][1000 genomes] |
| rs17076531 | 0.81[ASN][1000 genomes] |
| rs17076533 | 0.81[ASN][1000 genomes] |
| rs17076538 | 0.81[ASN][1000 genomes] |
| rs17076540 | 0.81[ASN][1000 genomes] |
| rs1852797 | 0.83[ASN][1000 genomes] |
| rs58553228 | 0.93[ASN][1000 genomes] |
| rs6915087 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830838 | chr6:147090745-147274669 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | esv2760996 | chr6:147229457-147269633 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:147244800-147251600 | Weak transcription | K562 | blood |
