Variant report

Variant	rs12660458
Chromosome Location	chr6:147308727-147308728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147295557..147298102-chr6:147307157..147308890,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10499242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499244	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966340	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661319	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12661587	0.82[EUR][1000 genomes]
rs12662397	0.97[ASN][1000 genomes]
rs12663509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665457	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665594	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665649	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076429	0.81[ASN][1000 genomes]
rs17076435	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076442	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076444	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076452	0.87[ASN][1000 genomes]
rs17076474	0.97[ASN][1000 genomes]
rs17076499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076507	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076512	0.97[ASN][1000 genomes]
rs17076522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076531	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852797	0.97[ASN][1000 genomes]
rs58553228	0.87[ASN][1000 genomes]
rs6910157	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915087	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147305800-147311000	Weak transcription	Fetal Heart	heart
2	chr6:147306000-147311200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:147306200-147310600	Weak transcription	HSMMtube	muscle
4	chr6:147306400-147310200	Weak transcription	Hela-S3	cervix
5	chr6:147306600-147310200	Weak transcription	A549	lung
6	chr6:147306600-147310600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:147306600-147311400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:147306600-147311400	Weak transcription	K562	blood
9	chr6:147307400-147310200	Weak transcription	HepG2	liver

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