Variant report

Variant	rs17076505
Chromosome Location	chr6:147291560-147291561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10499242	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499245	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661319	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12661587	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12662397	0.97[ASN][1000 genomes]
rs12663509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664925	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665457	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665649	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17076435	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076442	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076444	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076452	0.87[ASN][1000 genomes]
rs17076474	0.97[ASN][1000 genomes]
rs17076499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076507	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076510	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17076522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076540	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852797	0.97[ASN][1000 genomes]
rs58553228	0.87[ASN][1000 genomes]
rs6910157	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915087	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147289200-147294200	Weak transcription	Hela-S3	cervix
2	chr6:147291000-147292400	Weak transcription	Fetal Heart	heart
3	chr6:147291200-147291800	Enhancers	Osteobl	bone
4	chr6:147291200-147292200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:147291200-147292200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:147291400-147291600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links