Variant report

Variant	rs12663509
Chromosome Location	chr6:147296810-147296811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147295557..147298102-chr6:147307157..147308890,2	K562	blood:
2	chr6:147206608..147209541-chr6:147294040..147296917,2	K562	blood:
3	chr6:147198204..147200718-chr6:147295140..147296897,2	K562	blood:
4	chr6:147235163..147237661-chr6:147294955..147297730,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10499242	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966941	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661319	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12661587	0.82[EUR][1000 genomes]
rs12662397	0.97[ASN][1000 genomes]
rs12664925	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665457	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665594	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665649	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17076435	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17076442	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076444	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17076452	0.87[ASN][1000 genomes]
rs17076474	0.97[ASN][1000 genomes]
rs17076499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076507	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076510	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17076522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852797	0.97[ASN][1000 genomes]
rs58553228	0.87[ASN][1000 genomes]
rs6910157	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915087	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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