Variant report

Variant	rs12180097
Chromosome Location	chr6:54271230-54271231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12055413	1.00[EUR][1000 genomes]
rs12055863	1.00[EUR][1000 genomes]
rs12176182	1.00[EUR][1000 genomes]
rs16885263	1.00[EUR][1000 genomes]
rs2291824	1.00[EUR][1000 genomes]
rs3777637	1.00[EUR][1000 genomes]
rs3777638	1.00[EUR][1000 genomes]
rs3777639	1.00[EUR][1000 genomes]
rs3777641	1.00[EUR][1000 genomes]
rs60021603	1.00[EUR][1000 genomes]
rs73446702	1.00[EUR][1000 genomes]
rs9349707	1.00[EUR][1000 genomes]
rs9357803	1.00[EUR][1000 genomes]
rs9367567	1.00[EUR][1000 genomes]
rs9367571	1.00[EUR][1000 genomes]
rs9370293	1.00[EUR][1000 genomes]
rs9370294	1.00[EUR][1000 genomes]
rs9370297	1.00[EUR][1000 genomes]
rs9382327	1.00[EUR][1000 genomes]
rs9382328	1.00[EUR][1000 genomes]
rs9382339	1.00[EUR][1000 genomes]
rs9382340	1.00[EUR][1000 genomes]
rs9395938	1.00[EUR][1000 genomes]
rs9395940	1.00[EUR][1000 genomes]
rs9395941	1.00[EUR][1000 genomes]
rs9395945	1.00[EUR][1000 genomes]
rs9395946	1.00[EUR][1000 genomes]
rs9395952	1.00[EUR][1000 genomes]
rs9395955	1.00[EUR][1000 genomes]
rs9395956	1.00[EUR][1000 genomes]
rs9395957	1.00[EUR][1000 genomes]
rs9395960	1.00[EUR][1000 genomes]
rs9395961	1.00[EUR][1000 genomes]
rs9395963	1.00[EUR][1000 genomes]
rs9474848	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54269400-54284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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