Variant report

Variant	rs16885263
Chromosome Location	chr6:54213005-54213006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10484641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12055413	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12055863	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12175364	0.85[AMR][1000 genomes]
rs12176182	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12180097	1.00[EUR][1000 genomes]
rs2291824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297984	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3777637	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777638	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777641	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777642	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777653	1.00[MEX][hapmap];0.86[ASN][1000 genomes]
rs3777657	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3798275	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60021603	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60701944	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73446702	1.00[EUR][1000 genomes]
rs9349703	1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9349704	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9349707	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357800	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9357803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9367563	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9367564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9367565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9367567	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367571	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370285	0.86[ASN][1000 genomes]
rs9370287	0.86[ASN][1000 genomes]
rs9370293	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370294	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370297	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9370298	0.85[AMR][1000 genomes]
rs9382322	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9382324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9382327	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382328	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382339	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9382340	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395933	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9395938	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395945	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395952	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395955	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395956	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395957	1.00[EUR][1000 genomes]
rs9395960	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395961	1.00[EUR][1000 genomes]
rs9395963	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9474814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs9474848	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54211800-54256200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:54212000-54257400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:54212800-54225000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links