Variant report

Variant	rs9370285
Chromosome Location	chr6:54177692-54177693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54177292..54179184-chr6:54200767..54202415,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16885263	0.86[ASN][1000 genomes]
rs2047431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2291824	0.86[ASN][1000 genomes]
rs2297984	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777637	0.86[ASN][1000 genomes]
rs3777638	0.86[ASN][1000 genomes]
rs3777639	0.86[ASN][1000 genomes]
rs3777641	0.86[ASN][1000 genomes]
rs3777653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777657	0.84[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798275	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57943356	0.86[EUR][1000 genomes]
rs60021603	0.86[ASN][1000 genomes]
rs60701944	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349704	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9349707	0.86[ASN][1000 genomes]
rs9357800	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367563	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367564	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367567	0.86[ASN][1000 genomes]
rs9370287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382324	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9382327	0.86[ASN][1000 genomes]
rs9382328	0.86[ASN][1000 genomes]
rs9395933	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395938	0.86[ASN][1000 genomes]
rs9395940	0.86[ASN][1000 genomes]
rs9395941	0.86[ASN][1000 genomes]
rs9395945	0.86[ASN][1000 genomes]
rs9395946	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54173000-54178000	Active TSS	Fetal Intestine Large	intestine
2	chr6:54173000-54178200	Active TSS	Fetal Intestine Small	intestine
3	chr6:54176600-54191800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:54176600-54191800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:54177600-54178400	Active TSS	Fetal Kidney	kidney

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