Variant report

Variant	rs57943356
Chromosome Location	chr6:54100792-54100793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16884645	1.00[EUR][1000 genomes]
rs2047431	1.00[EUR][1000 genomes]
rs2297984	1.00[EUR][1000 genomes]
rs3777653	1.00[EUR][1000 genomes]
rs3777657	1.00[EUR][1000 genomes]
rs3798275	1.00[EUR][1000 genomes]
rs60701944	1.00[EUR][1000 genomes]
rs9349703	1.00[EUR][1000 genomes]
rs9349704	1.00[EUR][1000 genomes]
rs9357800	1.00[EUR][1000 genomes]
rs9367563	1.00[EUR][1000 genomes]
rs9367564	1.00[EUR][1000 genomes]
rs9370285	0.86[EUR][1000 genomes]
rs9370287	1.00[EUR][1000 genomes]
rs9382322	1.00[EUR][1000 genomes]
rs9382324	1.00[EUR][1000 genomes]
rs9395933	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54058800-54101000	Weak transcription	Left Ventricle	heart
2	chr6:54092800-54101600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:54097200-54103400	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:54100400-54103000	Weak transcription	Fetal Heart	heart
5	chr6:54100600-54101000	Enhancers	Right Ventricle	heart
6	chr6:54100600-54101000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:54100600-54101400	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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