Variant report

Variant	rs9382324
Chromosome Location	chr6:54201327-54201328
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54177292..54179184-chr6:54200767..54202415,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10484641	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12055413	1.00[AMR][1000 genomes]
rs12055863	1.00[AMR][1000 genomes]
rs12175364	1.00[AMR][1000 genomes]
rs12175696	0.85[AMR][1000 genomes]
rs12176182	1.00[AMR][1000 genomes]
rs16885263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2047431	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2291824	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2297984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35506389	0.85[AMR][1000 genomes]
rs3777637	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3777638	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3777639	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3777641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3777642	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777653	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3777657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3798275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55888793	0.85[AMR][1000 genomes]
rs57943356	1.00[EUR][1000 genomes]
rs60021603	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60701944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6902373	0.85[AMR][1000 genomes]
rs9296746	0.85[AMR][1000 genomes]
rs9349701	0.85[AMR][1000 genomes]
rs9349703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9349704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9349707	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9357796	0.85[AMR][1000 genomes]
rs9357797	0.85[AMR][1000 genomes]
rs9357798	0.85[AMR][1000 genomes]
rs9357799	0.85[AMR][1000 genomes]
rs9357800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9357803	1.00[AMR][1000 genomes]
rs9367555	0.85[AMR][1000 genomes]
rs9367557	0.85[AMR][1000 genomes]
rs9367560	0.85[AMR][1000 genomes]
rs9367563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9367564	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9367567	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9367571	1.00[AMR][1000 genomes]
rs9370277	0.85[AMR][1000 genomes]
rs9370278	0.85[AMR][1000 genomes]
rs9370280	0.85[AMR][1000 genomes]
rs9370285	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370287	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9370293	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs9370294	1.00[AMR][1000 genomes]
rs9370297	1.00[AMR][1000 genomes]
rs9370298	1.00[AMR][1000 genomes]
rs9382312	0.85[AMR][1000 genomes]
rs9382317	0.85[AMR][1000 genomes]
rs9382320	0.85[AMR][1000 genomes]
rs9382322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9382327	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9382328	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9382339	1.00[AMR][1000 genomes]
rs9382340	1.00[AMR][1000 genomes]
rs9395925	0.85[AMR][1000 genomes]
rs9395932	0.85[AMR][1000 genomes]
rs9395933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9395938	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395945	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395946	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395952	1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs9395955	1.00[AMR][1000 genomes]
rs9395956	1.00[AMR][1000 genomes]
rs9395960	1.00[AMR][1000 genomes]
rs9395963	1.00[AMR][1000 genomes]
rs9474814	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54198800-54202200	Enhancers	HUVEC	blood vessel
2	chr6:54200000-54201600	Enhancers	A549	lung
3	chr6:54200000-54201600	Enhancers	NH-A	brain
4	chr6:54200200-54201400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:54200200-54201400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54200200-54201400	Enhancers	HMEC	breast
7	chr6:54200200-54201400	Enhancers	HSMM	muscle
8	chr6:54200200-54201400	Enhancers	NHEK	skin
9	chr6:54200200-54201600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:54200200-54201600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:54200400-54201400	Enhancers	NHDF-Ad	bronchial
12	chr6:54200400-54201400	Enhancers	NHLF	lung
13	chr6:54200400-54201400	Enhancers	Osteobl	bone
14	chr6:54200400-54201600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:54200600-54201400	Enhancers	Muscle Satellite Cultured Cells	--

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