Variant report

Variant	rs35506389
Chromosome Location	chr6:54121646-54121647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12055413	0.85[AMR][1000 genomes]
rs12055863	0.85[AMR][1000 genomes]
rs12175364	0.85[AMR][1000 genomes]
rs12175696	1.00[AMR][1000 genomes]
rs12176182	0.85[AMR][1000 genomes]
rs2291824	0.85[AMR][1000 genomes]
rs2297984	0.85[AMR][1000 genomes]
rs34725649	0.83[ASN][1000 genomes]
rs3777637	0.85[AMR][1000 genomes]
rs3777638	0.85[AMR][1000 genomes]
rs3777639	0.85[AMR][1000 genomes]
rs3777641	0.85[AMR][1000 genomes]
rs3777657	0.85[AMR][1000 genomes]
rs3798275	0.85[AMR][1000 genomes]
rs55888793	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60021603	0.85[AMR][1000 genomes]
rs60701944	0.85[AMR][1000 genomes]
rs6902373	1.00[AMR][1000 genomes]
rs9296746	1.00[AMR][1000 genomes]
rs9349701	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9349703	0.85[AMR][1000 genomes]
rs9349704	0.85[AMR][1000 genomes]
rs9349707	0.85[AMR][1000 genomes]
rs9357796	1.00[AMR][1000 genomes]
rs9357797	1.00[AMR][1000 genomes]
rs9357798	1.00[AMR][1000 genomes]
rs9357799	1.00[AMR][1000 genomes]
rs9357800	0.85[AMR][1000 genomes]
rs9357803	0.85[AMR][1000 genomes]
rs9367555	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9367557	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9367560	1.00[AMR][1000 genomes]
rs9367563	0.85[AMR][1000 genomes]
rs9367564	0.85[AMR][1000 genomes]
rs9367567	0.85[AMR][1000 genomes]
rs9367571	0.85[AMR][1000 genomes]
rs9370271	0.83[ASN][1000 genomes]
rs9370272	0.83[ASN][1000 genomes]
rs9370273	0.83[ASN][1000 genomes]
rs9370275	0.83[ASN][1000 genomes]
rs9370277	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370278	1.00[AMR][1000 genomes]
rs9370280	1.00[AMR][1000 genomes]
rs9370293	0.85[AMR][1000 genomes]
rs9370294	0.85[AMR][1000 genomes]
rs9370297	0.85[AMR][1000 genomes]
rs9370298	0.85[AMR][1000 genomes]
rs9382309	0.83[ASN][1000 genomes]
rs9382310	0.83[ASN][1000 genomes]
rs9382312	1.00[AMR][1000 genomes]
rs9382317	1.00[AMR][1000 genomes]
rs9382322	0.85[AMR][1000 genomes]
rs9382324	0.85[AMR][1000 genomes]
rs9382327	0.85[AMR][1000 genomes]
rs9382328	0.85[AMR][1000 genomes]
rs9382339	0.85[AMR][1000 genomes]
rs9382340	0.85[AMR][1000 genomes]
rs9395912	0.83[ASN][1000 genomes]
rs9395913	0.83[ASN][1000 genomes]
rs9395914	0.83[ASN][1000 genomes]
rs9395915	0.83[ASN][1000 genomes]
rs9395923	0.83[ASN][1000 genomes]
rs9395925	1.00[AMR][1000 genomes]
rs9395933	0.85[AMR][1000 genomes]
rs9395938	0.85[AMR][1000 genomes]
rs9395940	0.85[AMR][1000 genomes]
rs9395941	0.85[AMR][1000 genomes]
rs9395945	0.85[AMR][1000 genomes]
rs9395946	0.85[AMR][1000 genomes]
rs9395952	0.85[AMR][1000 genomes]
rs9395955	0.85[AMR][1000 genomes]
rs9395956	0.85[AMR][1000 genomes]
rs9395960	0.85[AMR][1000 genomes]
rs9395963	0.85[AMR][1000 genomes]
rs9474790	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020329	chr6:54103966-54129147	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54119800-54121800	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:54119800-54121800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:54120200-54122000	Enhancers	Colon Smooth Muscle	Colon
4	chr6:54120400-54121800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:54121000-54121800	Enhancers	Stomach Smooth Muscle	stomach
6	chr6:54121000-54122600	Enhancers	Right Ventricle	heart
7	chr6:54121200-54121800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:54121200-54124400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:54121200-54124600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:54121400-54131200	Weak transcription	Left Ventricle	heart
11	chr6:54121400-54131400	Weak transcription	Psoas Muscle	Psoas
12	chr6:54121600-54121800	Flanking Active TSS	Fetal Heart	heart

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