Variant report

Variant	rs34725649
Chromosome Location	chr6:54108981-54108982
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs35506389	0.83[ASN][1000 genomes]
rs55888793	0.83[ASN][1000 genomes]
rs9349701	0.83[ASN][1000 genomes]
rs9367555	0.83[ASN][1000 genomes]
rs9367557	0.83[ASN][1000 genomes]
rs9370270	1.00[AMR][1000 genomes]
rs9370271	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370272	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370273	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370275	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370277	0.83[ASN][1000 genomes]
rs9382309	1.00[ASN][1000 genomes]
rs9382310	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395912	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395913	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395914	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395915	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395923	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1020329	chr6:54103966-54129147	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54101000-54119800	Weak transcription	Right Ventricle	heart
2	chr6:54101400-54120800	Weak transcription	Psoas Muscle	Psoas
3	chr6:54102200-54119800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:54104000-54119800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:54104200-54110200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:54104200-54120800	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:54108600-54109000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:54108600-54109000	Enhancers	Fetal Heart	heart
9	chr6:54108800-54111200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:54108800-54112200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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