Variant report

Variant	rs9370275
Chromosome Location	chr6:54105875-54105876
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12055520	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12174563	1.00[CHB][hapmap]
rs12176530	1.00[CHB][hapmap]
rs34725649	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35506389	0.83[ASN][1000 genomes]
rs526232	1.00[CHB][hapmap]
rs55888793	0.83[ASN][1000 genomes]
rs9349697	1.00[CHB][hapmap]
rs9349701	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9357789	1.00[CHB][hapmap]
rs9357790	1.00[CHB][hapmap]
rs9357792	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9367552	1.00[CHB][hapmap]
rs9367555	0.83[ASN][1000 genomes]
rs9367557	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9370262	1.00[CHB][hapmap]
rs9370263	1.00[CHB][hapmap]
rs9370264	1.00[CHB][hapmap]
rs9370267	1.00[CHB][hapmap]
rs9370270	1.00[AMR][1000 genomes]
rs9370271	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370272	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370273	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9370277	0.83[ASN][1000 genomes]
rs9382286	1.00[CHB][hapmap]
rs9382287	1.00[CHB][hapmap]
rs9382293	1.00[CHB][hapmap]
rs9382296	1.00[CHB][hapmap]
rs9382297	1.00[CHB][hapmap]
rs9382298	1.00[CHB][hapmap]
rs9382309	1.00[ASN][1000 genomes]
rs9382310	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395903	1.00[CHB][hapmap]
rs9395906	1.00[CHB][hapmap]
rs9395907	1.00[CHB][hapmap]
rs9395909	1.00[CHB][hapmap]
rs9395912	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395913	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395914	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395915	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395923	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9395932	1.00[JPT][hapmap]
rs9474735	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1020329	chr6:54103966-54129147	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54101000-54119800	Weak transcription	Right Ventricle	heart
2	chr6:54101400-54120800	Weak transcription	Psoas Muscle	Psoas
3	chr6:54102200-54119800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:54102600-54108400	Weak transcription	Left Ventricle	heart
5	chr6:54104000-54107000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:54104000-54108600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:54104000-54108600	Weak transcription	Fetal Heart	heart
8	chr6:54104000-54108800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:54104000-54119800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:54104200-54110200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:54104200-54120800	Weak transcription	Fetal Muscle Leg	muscle

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