Variant report

Variant	rs9395932
Chromosome Location	chr6:54168332-54168333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:54168233-54168605	Hela-S3	cervix:	n/a	chr6:54168414-54168427
2	CEBPB	chr6:54168309-54168547	IMR90	lung:	n/a	chr6:54168414-54168427
3	CEBPB	chr6:54168276-54168476	H1-hESC	embryonic stem cell:	n/a	chr6:54168414-54168427

Variant related genes	Relation type
TINAG	TF binding region

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs12055413	0.85[AMR][1000 genomes]
rs12055520	1.00[JPT][hapmap]
rs12055863	0.85[AMR][1000 genomes]
rs12175364	0.85[AMR][1000 genomes]
rs12175696	1.00[ASN][1000 genomes]
rs12176182	0.85[AMR][1000 genomes]
rs2047431	1.00[AMR][1000 genomes]
rs2291824	0.85[AMR][1000 genomes]
rs2297984	0.85[AMR][1000 genomes]
rs3777637	0.85[AMR][1000 genomes]
rs3777638	0.85[AMR][1000 genomes]
rs3777639	0.85[AMR][1000 genomes]
rs3777641	0.85[AMR][1000 genomes]
rs3777657	0.85[AMR][1000 genomes]
rs3798275	0.85[AMR][1000 genomes]
rs60021603	0.85[AMR][1000 genomes]
rs60701944	0.85[AMR][1000 genomes]
rs6902373	0.90[ASN][1000 genomes]
rs9296746	0.90[ASN][1000 genomes]
rs9349701	1.00[JPT][hapmap]
rs9349703	0.85[AMR][1000 genomes]
rs9349704	0.85[AMR][1000 genomes]
rs9349707	0.85[AMR][1000 genomes]
rs9357792	1.00[JPT][hapmap]
rs9357796	0.90[ASN][1000 genomes]
rs9357797	0.90[ASN][1000 genomes]
rs9357798	1.00[ASN][1000 genomes]
rs9357799	1.00[ASN][1000 genomes]
rs9357800	0.85[AMR][1000 genomes]
rs9357803	0.85[AMR][1000 genomes]
rs9367557	1.00[JPT][hapmap]
rs9367560	1.00[ASN][1000 genomes]
rs9367563	0.85[AMR][1000 genomes]
rs9367564	0.85[AMR][1000 genomes]
rs9367567	0.85[AMR][1000 genomes]
rs9367571	0.85[AMR][1000 genomes]
rs9370272	1.00[JPT][hapmap]
rs9370273	1.00[JPT][hapmap]
rs9370275	1.00[JPT][hapmap]
rs9370278	0.90[ASN][1000 genomes]
rs9370280	0.90[ASN][1000 genomes]
rs9370293	0.85[AMR][1000 genomes]
rs9370294	0.85[AMR][1000 genomes]
rs9370297	0.85[AMR][1000 genomes]
rs9370298	0.85[AMR][1000 genomes]
rs9382310	1.00[JPT][hapmap]
rs9382312	0.90[ASN][1000 genomes]
rs9382317	0.90[ASN][1000 genomes]
rs9382320	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9382322	0.85[AMR][1000 genomes]
rs9382324	0.85[AMR][1000 genomes]
rs9382327	0.85[AMR][1000 genomes]
rs9382328	0.85[AMR][1000 genomes]
rs9382339	0.85[AMR][1000 genomes]
rs9382340	0.85[AMR][1000 genomes]
rs9395912	1.00[JPT][hapmap]
rs9395913	1.00[JPT][hapmap]
rs9395925	0.90[ASN][1000 genomes]
rs9395933	0.85[AMR][1000 genomes]
rs9395938	0.85[AMR][1000 genomes]
rs9395940	0.85[AMR][1000 genomes]
rs9395941	0.85[AMR][1000 genomes]
rs9395945	0.85[AMR][1000 genomes]
rs9395946	0.85[AMR][1000 genomes]
rs9395952	0.85[AMR][1000 genomes]
rs9395955	0.85[AMR][1000 genomes]
rs9395956	0.85[AMR][1000 genomes]
rs9395960	0.85[AMR][1000 genomes]
rs9395963	0.85[AMR][1000 genomes]
rs9474790	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2762594	chr6:54159146-54168766	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54167600-54168800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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