Variant report

Variant	rs9357792
Chromosome Location	chr6:54046626-54046627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12055520	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12174563	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12176530	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1280858	1.00[ASN][1000 genomes]
rs526232	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72961912	1.00[ASN][1000 genomes]
rs73741447	1.00[ASN][1000 genomes]
rs9349697	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9349701	1.00[JPT][hapmap]
rs9357789	1.00[CHB][hapmap]
rs9357790	1.00[CHB][hapmap]
rs9367552	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9367557	1.00[JPT][hapmap]
rs9370262	1.00[CHB][hapmap]
rs9370263	1.00[CHB][hapmap]
rs9370264	1.00[CHB][hapmap]
rs9370265	1.00[ASN][1000 genomes]
rs9370266	1.00[ASN][1000 genomes]
rs9370267	1.00[CHB][hapmap]
rs9370271	1.00[CHB][hapmap]
rs9370272	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9370273	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9370275	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9382286	1.00[CHB][hapmap]
rs9382287	1.00[CHB][hapmap]
rs9382293	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9382294	1.00[ASN][1000 genomes]
rs9382295	1.00[ASN][1000 genomes]
rs9382296	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9382297	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9382298	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9382299	1.00[ASN][1000 genomes]
rs9382310	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9395903	1.00[CHB][hapmap]
rs9395906	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9395907	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9395909	1.00[CHB][hapmap]
rs9395912	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9395913	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9395932	1.00[JPT][hapmap]
rs9474735	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1851754	chr6:53989526-54050219	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv823699	chr6:54038268-54047656	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
2	chr6:54008400-54046800	Weak transcription	Right Ventricle	heart
3	chr6:54045000-54046800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:54045400-54048400	Weak transcription	Brain Angular Gyrus	brain
5	chr6:54045800-54069200	Weak transcription	Fetal Heart	heart
6	chr6:54046000-54051600	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:54046400-54047400	Genic enhancers	Left Ventricle	heart
8	chr6:54046400-54047400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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