Variant report

Variant	rs9382294
Chromosome Location	chr6:54002243-54002244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:53992281..53994885-chr6:54000066..54003038,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12055520	1.00[ASN][1000 genomes]
rs12174563	1.00[ASN][1000 genomes]
rs12176530	1.00[ASN][1000 genomes]
rs1280858	1.00[ASN][1000 genomes]
rs526232	1.00[ASN][1000 genomes]
rs72961912	1.00[ASN][1000 genomes]
rs73741447	1.00[ASN][1000 genomes]
rs9349697	1.00[ASN][1000 genomes]
rs9357792	1.00[ASN][1000 genomes]
rs9367552	1.00[ASN][1000 genomes]
rs9370265	1.00[ASN][1000 genomes]
rs9370266	1.00[ASN][1000 genomes]
rs9382293	1.00[ASN][1000 genomes]
rs9382295	1.00[ASN][1000 genomes]
rs9382296	1.00[ASN][1000 genomes]
rs9382297	1.00[ASN][1000 genomes]
rs9382298	1.00[ASN][1000 genomes]
rs9382299	1.00[ASN][1000 genomes]
rs9395906	1.00[ASN][1000 genomes]
rs9395907	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2759431	chr6:53839373-54007349	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv603110	chr6:53885918-54103794	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv885885	chr6:53920024-54046264	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1017633	chr6:53935336-54118476	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2757169	chr6:53951857-54007349	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv885886	chr6:53956877-54009067	Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv885887	chr6:53961784-54046264	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2829860	chr6:53985339-54005043	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1851754	chr6:53989526-54050219	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53989800-54003800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:53997000-54003800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:53998000-54099200	Weak transcription	Psoas Muscle	Psoas
4	chr6:53998400-54002400	Weak transcription	Right Atrium	heart
5	chr6:54000800-54005800	Weak transcription	Fetal Brain Male	brain
6	chr6:54001400-54002800	Strong transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:54001400-54011000	Weak transcription	Fetal Heart	heart
8	chr6:54001600-54002800	Strong transcription	Right Ventricle	heart
9	chr6:54001600-54003200	Strong transcription	Left Ventricle	heart
10	chr6:54001600-54003400	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:54001800-54003000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr6:54002000-54007800	Weak transcription	Liver	Liver

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