Variant report

Variant	rs12184886
Chromosome Location	chr13:39867313-39867314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12427687	0.84[ASN][1000 genomes]
rs12428034	0.84[ASN][1000 genomes]
rs12428181	0.91[ASN][1000 genomes]
rs12429060	1.00[ASN][1000 genomes]
rs17059609	0.96[ASN][1000 genomes]
rs17059622	0.96[ASN][1000 genomes]
rs17059628	1.00[ASN][1000 genomes]
rs2181759	0.85[ASN][1000 genomes]
rs2324253	0.96[ASN][1000 genomes]
rs4640054	0.85[ASN][1000 genomes]
rs56183908	0.85[ASN][1000 genomes]
rs58005196	0.85[ASN][1000 genomes]
rs58551847	0.96[ASN][1000 genomes]
rs59290790	1.00[EUR][1000 genomes]
rs59329722	0.96[ASN][1000 genomes]
rs7322559	0.85[ASN][1000 genomes]
rs7330251	1.00[ASN][1000 genomes]
rs7332991	0.85[ASN][1000 genomes]
rs7334522	0.81[ASN][1000 genomes]
rs73467356	0.85[ASN][1000 genomes]
rs73467371	0.85[ASN][1000 genomes]
rs74044032	0.85[ASN][1000 genomes]
rs8001763	0.85[ASN][1000 genomes]
rs9315668	1.00[EUR][1000 genomes]
rs9594325	1.00[EUR][1000 genomes]
rs9603522	1.00[EUR][1000 genomes]
rs9805688	1.00[EUR][1000 genomes]
rs9972084	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv437164	chr13:39867227-39872237	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39867200-39868600	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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