Variant report

Variant	rs58551847
Chromosome Location	chr13:39855604-39855605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12184886	0.96[ASN][1000 genomes]
rs12427687	0.88[ASN][1000 genomes]
rs12428034	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12428181	0.94[ASN][1000 genomes]
rs12429060	0.96[ASN][1000 genomes]
rs17059609	1.00[ASN][1000 genomes]
rs17059622	1.00[ASN][1000 genomes]
rs17059628	0.96[ASN][1000 genomes]
rs2181759	0.81[ASN][1000 genomes]
rs2324253	1.00[ASN][1000 genomes]
rs4640054	0.81[ASN][1000 genomes]
rs56183908	0.81[ASN][1000 genomes]
rs58005196	0.81[ASN][1000 genomes]
rs59329722	1.00[ASN][1000 genomes]
rs7322559	0.81[ASN][1000 genomes]
rs7330251	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7332991	0.81[ASN][1000 genomes]
rs73467356	0.81[ASN][1000 genomes]
rs73467371	0.81[ASN][1000 genomes]
rs74044032	0.81[ASN][1000 genomes]
rs8001763	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39854200-39856600	Weak transcription	Pancreas	Pancrea
2	chr13:39855200-39857600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39855400-39856000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:39855400-39856800	Enhancers	Adipose Nuclei	Adipose
5	chr13:39855600-39856200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:39855600-39856200	Bivalent Enhancer	HSMMtube	muscle
7	chr13:39855600-39856400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:39855600-39857800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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